| 1 | London Alliance FC 2006 Boys Mustangs | 4 | 4 | 0 | 0 | 30 | 2 | 28 | 12 |
| 2 | Brampton SC 2006 | 4 | 4 | 0 | 0 | 15 | 2 | 13 | 12 |
| 3 | Niagara Regional SP B 2006 | 4 | 4 | 0 | 0 | 11 | 1 | 10 | 12 |
| 4 | West Toronto United | 3 | 3 | 0 | 0 | 16 | 3 | 13 | 9 |
| 5 | Bolton Wanderers B2006 Red | 4 | 3 | 0 | 1 | 19 | 7 | 12 | 9 |
| 6 | Vaughan Azzurri Red | 3 | 2 | 1 | 0 | 13 | 0 | 13 | 7 |
| 7 | Bolton Wanderers B2006 White | 4 | 2 | 1 | 1 | 15 | 4 | 11 | 7 |
| 8 | Glen Shields FC - Black | 3 | 2 | 0 | 1 | 13 | 5 | 8 | 6 |
| 9 | Belle River FC | 3 | 2 | 0 | 1 | 9 | 4 | 5 | 6 |
| 10 | Kitchener Spirit Academy | 4 | 2 | 0 | 2 | 9 | 4 | 5 | 6 |
| 11 | Rexdale Unite FC Phantoms 2006 Boys | 4 | 2 | 0 | 2 | 7 | 7 | 0 | 6 |
| 12 | Guelph Jr. Gryphons Red | 3 | 2 | 0 | 1 | 5 | 5 | 0 | 6 |
| 13 | Woodbridge Strikers | 3 | 2 | 0 | 1 | 4 | 4 | 0 | 6 |
| 14 | Pickering Power Green 2006B | 3 | 2 | 0 | 1 | 7 | 8 | -1 | 6 |
| 15 | Niagara Falls Titans | 3 | 2 | 0 | 1 | 2 | 5 | -3 | 6 |
| 16 | Scarborough Wexford Dynamo 06B | 3 | 1 | 1 | 1 | 6 | 3 | 3 | 4 |
| 17 | Ottawa South United M2006ERSL Regional White | 3 | 1 | 1 | 1 | 1 | 2 | -1 | 4 |
| 18 | Leamington SC United | 3 | 1 | 0 | 2 | 9 | 8 | 1 | 3 |
| 19 | Flamborough Dundas SC U13 Boys | 3 | 1 | 0 | 2 | 6 | 5 | 1 | 3 |
| 20 | Guelph Jr. Gryphons Red | 1 | 1 | 0 | 0 | 3 | 2 | 1 | 3 |
| 21 | Mississauga Dixie B2006 Black | 2 | 1 | 0 | 1 | 5 | 5 | 0 | 3 |
| 22 | Benfica Toronto | 3 | 1 | 0 | 2 | 3 | 3 | 0 | 3 |
| 23 | Mississauga Clarkson Comets | 3 | 1 | 0 | 2 | 3 | 6 | -3 | 3 |
| 24 | Windsor TFC U13 Boys | 3 | 1 | 0 | 2 | 1 | 6 | -5 | 3 |
| 25 | Byron | 3 | 1 | 0 | 2 | 3 | 14 | -11 | 3 |
| 26 | North York Asante Elite 2006 | 1 | 0 | 0 | 1 | 2 | 3 | -1 | 0 |
| 27 | Innisfil Stampeders B06 | 3 | 0 | 0 | 3 | 2 | 8 | -6 | 0 |
| 28 | Barrie FC B06 Blue | 3 | 0 | 0 | 3 | 2 | 9 | -7 | 0 |
| 29 | Waterloo United U13 Boys B | 3 | 0 | 0 | 3 | 2 | 11 | -9 | 0 |
| 30 | OttawaTFC Red U13 Regional | 2 | 0 | 0 | 2 | 0 | 12 | -12 | 0 |
| 31 | Glen Shields FC - White | 3 | 0 | 0 | 3 | 2 | 17 | -15 | 0 |
| 32 | Kleinburg Nobleton SC Boys U13 | 3 | 0 | 0 | 3 | 0 | 22 | -22 | 0 |
| 33 | Huntsville Strikers | 3 | 0 | 0 | 3 | 0 | 28 | -28 | 0 |
